| "The Punisher Strikes Twice!" | | Misled by the Jackal into thinking that Spider-Man is a murderer, the Punisher hunts down the wallcrawler in an effort to kill him. Spider-Man quickly realizes that this new enemy is more lethal than many of his known foes. |
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| "Danger Is A Man Named... Tarantula" | | After Tarantula and his gang hijack a cruiseship carrying Peter Parker and some of his friends, Spider-Man enters the scene to try and save the day. But the Punisher also manages to get onboard of the boat, and has his own ideas of Spider-Man's presence there. |
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| "Shoot-Out In Central Park" | | While Spider-Man tries to convince the Punisher that he's innocent and only trying to help, Tarantula and his gang flee the ship. The two heroes decide to team up in an efford to hunt down the wanted criminal. |
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| "... And The Nightcrawler Came Prowling, Prowling" | | A murderer is on the loose in New York, killing people at random. Spider-Man, Nightcrawler and the Punisher try to hunt him down... and therefore hunt eachother, because each of them suspects the other of the murders. |
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| "Let The Punisher Fit The Crime" | | Realizing that the murderer is not one of them, the three heroes team up in a joined effort to bring justice. But the real murderer manages to capture Spider-Man, and uses him as a hostage to get to his real target: the Punisher. |
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| "The Hitman's Back In Town" | | After a failed attempt to stop the Hitman from kidnapping of Daily Bugle owner J. J. Jamesson, Spider-Man and Punisher team up to rescue the missing newspaper tycoon. |
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| "Big Apple Battleground!" | | The hunt for the Hitman and his victim J.J. Jameson takes Spider-Man and the Punisher to the top of the Statue of Liberty. They have to hurry if they want to save him because a bomb is about to destroy the U.S.' symbol of freedom, and everybody in it. |
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| "One For Those Long Gone!" | | |
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| "Spider-Man: Threat Or Menace?" | | |
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| "To Sow The Seeds Of Death's Day" | | |
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| "Accounts Settled, Accounts Due" | | |
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| "Fear Grows In Brooklyn!" | | |
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| "Stalkers In The Shadows" | | With the help of Boomerang, Frank escapes from prison to hunt down the Kingpin... leaving a trail of bodies for Spider-Man to follow. He's not the only one who wants a shot at the crime-lord though. |
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| "Crime And Punishment!" | | Frank is taking his vigilante actions too far by shooting at jaywalkers and looters. It does not stop his hunt for the Kingpin though. Maybe Spider-Man will? |
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| "Delusions" | | Frank is on trial and the court doesn't seem to understand his motives. |
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| "Circle of Blood" | | Back in Ryker's Island prison, Frank learns about the plans for a major escape. Trying to prevent it from happening, he meets The Trust; a group of concerned 'citizens' who support his actions as the Punisher. |
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| "Back To The War" | | Having joined The Trust, Frank starts taking down major crime leaders in New York. But slowly he realizes The Trust gets out of control, and their actions only cause a greater war with innocent victims. |
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| "Slaughterday" | | Not only is Frank trying to stop the ongoing gangwar in New York, he also wants to take out The Trust. But The Trust is assembling an army of its own: brainwashed criminals dressed like their greatest enemy, the Punisher. |
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| "Final Solution" | | Frank learns about the location of the secret hideout of The Trust. In a final effort to take them out once and for all, Frank prepares a assault on the estate. |
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| "Final Solution, part 2" | | Having fought his way through traps and look-alike enemies, Frank finally meets the leader of The Trust. |
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